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PLOS BLOGS DNA Science

Can a Quirky Chromosome Create a Second Human Species?

In this age of genome sequencing, we can lose sight of the importance of how our genomes are distributed over 23 pairs of chromosomes. Rearrangements of the pairs are invisible to sequencing if the correct amount of genetic material is present.

A recent genetic counseling session reminded me of a chromosomal quirk that flies completely under the radar of genome sequencing, yet if it were to turn up in two copies in a bunch of people who have children together, could theoretically seed a second human species, one characterized by a chromosome number of 44, not 46.

13 14 RobCHROMOSOME PIGGYBACKS
The young couple I counseled had suffered several early pregnancy losses, and tests had revealed extra material from chromosome 22. Although it’s a tiny chromosome, it is gene-dense and the extra genetic material ends development just as an embryo is becoming a fetus.

The lab report profiled single nucleotide polymorphism (SNP) landmarks, and detected overrepresentation of pieces of chromosome 22. But this was on a genomewide basis using microarray technology — not the cut-and-paste size-ordered chromosome chart that is an old-fashioned karyotype. SNPs may be newer, but the distinction between an extra chromosome 22, which the lab report inferred, and the actuality of an extra tiny chromosome glommed onto one of the other chromosomes, is critical for predicting recurrence in a family — because such a piggybacked chromosome would explain the repeated losses. It is a case of not seeing the genetic forest for the trees. Chromosomes still count.

One type of chromosome adhered to another is a Robertsonian translocation, named after William Rees Brebner Robertson, Ph.D., who first described it in 1916 in grasshoppers. The person, or grasshopper, with one “Rob” chromosome is fine, because the correct two gene sets are there – just rearranged. But making gametes (sperm or egg) is problematical, because the Rob chromosome has a dual identity from its two parts, and won’t separate as chromosome pairs typically do during meiosis. It’s a little like a couple in a square dance who won’t pull apart when everyone else does.

Meiosis is the form of cell division that halves the chromosome sets as sperm and eggs form.
Meiosis is the form of cell division that halves the chromosome sets as sperm and eggs form.

Let’s say a chromosome #22 has glommed onto a chromosome #13 in a man. His sperm can get a normal 13 and a normal 22; just the piggybacked 13;22 like the man himself; or 4 “unbalanced” possibilities that contribute too much or too little of the implicated chromosomes. For a family, that means a 2/3 risk of unbalanced chromosomes for each pregnancy — and loss or a congenital syndrome.

One in 1,000 people has one Rob chromosome, and is a carrier (heterozygote) for it. Robs happen only in chromosomes termed acrocentrics that have one long arm and one very tiny arm, or in telocentrics, which have only a long arm (but we don’t have them). Our acrocentrics are chromosomes 13, 14, 15, 21, and 22. A Rob chromosome 21 accounts for the rare cases of Down syndrome that are not due to a full trisomy (extra chromosome) and are much more likely to recur in families.

miceOF MICE AND MUNTJACS
Reports of Robertsonian translocations in the animal kingdom are sparse, but mice are curiously adept at shuffling their chromosomes. Their acrocentrics and telocentrics glom into larger metacentrics in many ways.

The first departure from the common house mouse (Mus musculus) was the “tobacco mouse” (Mus poschiavinus), described in 1869 from specimens trapped in a tobacco factory in Valle di Poschiavo, Switzerland. They had big heads and small, dark bodies. Tobacco mice were later found in the Italian Alps and their distinctive set of 22 chromosomes discovered, their 9 pairs of equal-armed metacentrics coalesced from the ancestral 40 telocentrics of the house mouse.

The dynamic chromosome count of mice likely reflects attractions of  TTAGAGAG repeats at their tips, which are echoed, but in reverse, at their main constrictions, the centromeres. Such reverse repeats in chromosomes are like Velcro, mixing and matching their parts, creating at least 100 different “races” of mice that are, genetically speaking, distinct species because they can only reproduce with each other. The resulting types of chromosomally-defined mice are geographically fixed, because mice don’t travel much (unless they sneak onto ships).

An ancestral muntjac
An ancestral muntjac

Muntjacs are also prone to Robs. The ancestral Muntiacus reevesi has 46 chromosomes in both male and female, whereas the derived Muntiacus muntjac has just 6 chromosomes in the female and 7 in the male. Chromosome banding reveals that the two Asian deer species have the same genes, but they’re splayed out differently among the chromosomes. Rams and cotton rats have Robs too.

Big chromosomes shattering into smaller ones, although that seems energetically more favorable than formation of a Rob, is actually rarer. Such chromosomal fission has been reported only in cultured cells, a zebra family, and in the black rat of Mauritius. Chromosome fusion at the tip rather than the exposed centromeres is also rare, but distinguishes Asian river buffaloes from Malaysian swamp water buffaloes.

A carrier of a Rob has one unusual, large chromosome.
A carrier of a Rob has one unusual, large chromosome.

A NEW BREED OF HUMAN?
Far far rarer than human Rob heterozygotes are homozygotes with two Robs, because these individuals can only arise from inheriting one copy of the unusual chromosome from each parent – which typically means the parents are related and inherited the Rob from a shared ancestor, like a common great-grandparent. Cases of these Rob homozygotes, who have 44 chromosomes rather than the normal 46, are exceedingly rare:

• A 1984 report describes a family with 3 adult siblings who had 44 chromosomes, #s 13 and 14 combined.
• A 1988 report tells of 3 distantly-related families in Finland, also involving #s 13 and 14, whose Rob chromosome passed in carriers through at least 9 generations, appearing in at least one homozygote.
• A 1989 paper describes a Rob between #s 14 and 21 in a homozygote whose carrier parents were related.

Trickling into the headlines was a case report from 2013 of a 25-year-old healthy Chinese man who has 44 chromosomes because each 14 joins a 15 – a combo not seen before. His parents, both translocation carriers, were first cousins. The Chinese man’s sperm carry 21 autosomes and an X or Y, and he should be fertile – but only with a woman who is similarly chromosomally endowed. Chances are he’ll never find her. But if he does …

FROM SCIENCE TO SCI-FI
The report on the Chinese man with 44 chromosomes ends with: “The aberration can provide material for evolution. … Long term isolation of a group of individuals who are homozygous for a particular Robertsonian translocation chromosome could theoretically lead to the establishment of a new human subspecies having a full genetic complement in 44 chromosomes.

(NHGRI)
(NHGRI)

It might have happened before. Could the 48 chromosomes of a shared ancestor of humans and chimps have branched to yield our 46 chromosomes? Fusion of chimp chromosomes 12 and 13, according to banding patterns, might have generated our larger chromosome 2.

The idea of inheriting a double dose of a Robertsonian chromosome fueling human speciation isn’t new. I wrote about it in 2002 in The Scientist, wherein Lisa Schaffer, PhD, of “Paw Print Genomics” at Washington State University, Spokane, who at that time studied Robs, speculated, “With 1 in 1,000 individuals carrying a Robertsonian translocation, the likelihood of two carriers getting together and both transmitting their translocation is 1 in 4 million–so they are out there, just phenotypically normal.”

(I caught up with Dr. Schaffer this week, and she said that not too many people these days work with Robs. She and I fear that cytogenetics — the study of chromosomes and traits — is a dying art. It was my favorite part of graduate school. I learned how to glean meaning from chromosomes from one of the masters, corn geneticist Marcus Rhoades.)

Brown,r_time_macine60The possibility of a new human species with 44 chromosomes can flesh out science fiction plots, if different sets of mutations accumulate in the two populations derived from the ancestral one. It may explain the origin of the bluish ghoulish subterranean Morlocks who eat the sun-loving, peaceful aboveground Eloi in H.G. Wells’ future world of The Time Machine, written in 1898. Or Robs may underlie the cannibalistic screeching humanoid “aberrations,” aka “Abbies,” our descendants, who will take over the future world depicted in last summer’s Wayward Pines.

Neither H. G. Wells nor Wayward Pines’ creator Blake Crouch evoked Robertsonian translocation as a plausible route to rapid human evolution (or devolution) — but they could have. Sci-fi author Greg Bear came very close in his marvelous 1999 and 2003 novels Darwin’s Radio and Darwin’s Children. He imagines that a latent retrovirus awakened in the genomes of pregnant women in 1999 shuffled the genomes of a new generation in ways that created cells with 52 chromosomes instead of 46, thereby instantly establishing a group that can successfully mate only among themselves. You’ll have to read the books to learn how and why the “virus children” are superior. Forced into camps by the fearful majority, they establish their own culture, further separating the two types of people, a little bit reminiscent of a presidential election in the US. Bear’s alternate reality is a compelling depiction of reproductive isolation leading, presumably, to speciation, with an initial chromosomal upheaval as the impetus.

I spoke to Bear back in 2004, again for The Scientist (a mechanism for the rapid extinction of a dedicated freelance writer is a change in editor-in-chief). Greg Bear is a self-taught scientist with a soaring imagination. Said he, “My secrets are few. I love biology. I have been researching it in constant reading since the early 1980s. I saw very clearly that DNA must be computational, a self-organizing, self-repairing system. In the early 90s, it became clear to me that modern evolutionary theory was incomplete. I set out to find all the out-of-the-way papers that I could to prove that nature was a network, from top to bottom.” The Darwin series arose from those thoughts — and he clearly knew about Robs.

I’m not very good at writing fiction and am in awe of people like Bear who can, but if I could, I’d follow up on this theme of 44-chromosome people arising by chromosomal happenstance and staying hidden in plain sight among those smugly having their genomes sequenced. Might social media catalyze such an event, which, after all, wasn’t around when the Time Machine or even Darwin’s Radio were written? Alas, Facebook’s Robertsonian Translocation Support Group, founded in 2011, only has 2 posts, the first of which evokes the Lord, probably turning off those seeking scientific information.

imagesWhen I’m through with my next round of textbook revisions, maybe I’ll give fiction a shot … and honor what may be the dying biological art of cytogenetics.

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Discussion
  1. I am in awe of people like you, and like Greg Bear. I can barely convey a thought in writing.

    I spoke with Eugene Garfield, the founder of The Scientist in 1995, and mention of my book (co-authored by Robert Francoeur) appeared later that year. I met “Gene” at an invitation only conference that he funded in its entirety. Ninety experts from all over the world — all expenses paid, with Roger Gorski as the keynote speaker.

    Greg Bear was the first to incorporate what is currently known about pheromones and cytogenetics into his works. Eugene Daev, Anna Di Cosmo, and Bruce McEwen are among the others.

    Obviously, no one has time to cover all the extant literature. That’s why it’s great that you took a step back in time that will help others move forward when they decide to pursue details about cytogenetics.

    See also: http://www.gregbear.com/archives/board_2015.htm
    Date: 01/28/2015 From: Steven Taylor
    Location: United States
    James V. Kohl claims you incorporated his model of nutrient dependent, pheromone ecological adaptation in your Darwin novels. Any truth to that?

    Re: James V. Kohl
    Date: 01/29/2015
    From: Greg Bear
    There’s more than a hint of pheromone-HERV and cortico-steroid interaction in DARWIN’S RADIO. And James is certainly a pioneer in the pheromone world! We’ve corresponded for years on these subjects. I’m not sure about the nutrient angle, however. Interesting to follow that track as well!

  2. Thanks so much James. I loved Gene and writing for The Scientist, I did hundreds of articles for them. Has he passed away? There was a rumor and I looked for an obit a few years ago and I found one but I don’t think it was him. What a leader and visionary. I felt like an old fart writing that post but the patient made me realize the limitations of sequencing. I love when genetics makes me think!

  3. I met him though an octogenerian psychiatrist turned geneticist who presented on trinucleotide repeats and X-linked sexual orientation. “Bill” was ignored by virtually everyone except Gene and me. I was introduced to Gene the next day when they invited my to join them at breakfast, which is when Gene expressed an interest in my book. I’m certain that no one else but the conference organizers knew Gene was there.

    I never saw either of them again. Both provided the extra push that led Teresa Binstock and me to publish “From Fertilization to Adult Sexual Behavior” with Milton Diamond in Hormones and Behavior http://www.hawaii.edu/PCSS/biblio/articles/1961to1999/1996-from-fertilization.html

    Excerpt: “Parenthetically it is interesting to note even the yeast Saccharomyces cerevisiae has a gene-based equivalent of sexual orientation (i.e., a-factor and alpha-factor physiologies). These differences arise from different epigenetic modifications of an otherwise identical MAT locus (Runge and Zakian, 1996; Wu and Haber, 1995).”

    See: Turner, W.J. (1995) Asexuality, homosexuality, and transexuality (abstract) International Behavioral Development Symposium: Biological Basis of Sexual Orientation and Sex Typical Behavior, Minot, ND, May 25- 27, 77.

    See also: Primate CpG Islands Are Maintained by Heterogeneous Evolutionary Regimes Involving Minimal Selection http://linkinghub.elsevier.com/retrieve/pii/S009286741100482X

    Since 1995, few people besides Greg Bear have realized the significance of anything published about any model organism from yeasts to primates that does not tout “evolutionary regimes” or other inexplicable nonsense. And currently, pseudoscientists are scrambling to avoid questions about weekend evolution of the bacterial flagellum, chromosomal rearrangements, and the stability of organized genomes. Pseudoscientist know the chromosomal rearrangements are neo-Darwinian evolutionary theory killers — as were (or still are) Gene Garfield and my friend “Bill” Turner.

    It’s always fascinated me to find others, like you, who are connected to the extremely intelligent people from my past — especially when you are contributing to a legacy of accurate representations that link atoms to ecosystems via molecular epigenetics, which is what all serious scientists must do.

  4. First, I have to admit that I don’t fully understand all that you are talking about, it’s amazing just how complex genetics can be. That being said, I have a theory that suggests that the human ‘race’ already ‘tried’ to diverge into different species, probably more than once.
    I’ve read that a woman’s ring finger is about the same length as her index finger, but a man’s ring finger is typically longer. So my theory concerns “Mitochondrial Eve” and her counterpart “Genetic Adam”. If I’m understanding correctly, there was a Genetic Adam and a Genetic Eve, but they lived thousands of years apart. In my mind, this implies that men and women evolved in different environments at different times. In other words, the human ‘race’ began to diverge into two different species and then re-converged into one again.
    I think it’s interesting to think about, but have no way of knowing just how likely it is that this theory might be true.

  5. Mitochondrial Eve was never meant to refer to a particular woman. She refers to the most recent common ancestor in terms of mitochondrial lineage. Genetics isn’t that complicated. The post just means that when sequencing genomes, one can lose sight of the organization into chromosomes, and because chromosomes are the units that are sorted and transmitted in meiosis, not following chromosomes at all can not count information that is informative when one is counseling patients. I’m glad you put “tried” in parens, because evolution is not purposeful, it doesn’t strive to achieve something. And even the definition of species is a fluid concept, a label we put on ourselves and others. As for the different finger length, that has to do with the androgen receptor and hormone exposure prenatally.

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